BDgene

SNP Report

Basic Info
Name rs2282888 dbSNP Ensembl
Location chr7:21436514 - 21436514(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.207268
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000222584, ENST00000432066, ENST00000448246); NMD_transcript_variant(ENST00000448246)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Zhou, X.,2009 A/G Allelic association: Caucasian Families for Bipolar Disorder...... Allelic association: Caucasian Families for Bipolar Disorder: TDT: Risk allele is G, MAF=0.39, P-value = 0.07; Chinese Case-Controls for Bipolar Disorder: Risk allele is G, MAF=0.09, P-value = 0.067 More... No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SP4 Sp4 transcription factor 7p15 1(1/0/0)

SNPs in LD with rs2282888 (count: 26) View in gBrowse (chr7:21434992..21513377 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 26)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016