SNP Report

Basic Info
Name rs2279381 dbSNP Ensembl
Location chr6:122780399 - 122780399(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.00698882
Functional Annotation missense_variant.
Polyphen Annotation: probably damaging(ENST00000356535); possibly damaging(ENST00000368444)
SIFT Annotation: deleterious(ENST00000368444, ENST00000356535)
Consequence to Transcript missense_variant(ENST00000368444, ENST00000356535)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Iwayama, Y., 2010 T/C P-value for allele test is 0.4937, p-value for genotype test...... P-value for allele test is 0.4937, p-value for genotype test is 0.4869, p-value is 0.9998 after correction by permutation test. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FABP7 fatty acid binding protein 7, brain 6q22-q23 1(1/0/0)

SNPs in LD with rs2279381 (count: 0) View in gBrowse (chr6:122780399..122780399 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)