BDgene

SNP Report

Basic Info
Name rs2273684 dbSNP Ensembl
Location chr20:34941963 - 34941963(1)
Variant Alleles T/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.466853
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000216951, ENST00000451957)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Green, E. K.,2012 G/T BD ImmunoChip:P-value = 0.00000923,OR = 1.245;ImmunoChip, PG...... BD ImmunoChip:P-value = 0.00000923,OR = 1.245;ImmunoChip, PGC-BD combined data:P-balue = 0.000000472,OR = 1.119 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GSS glutathione synthetase 20q11.2 1(0/0/1)

SNPs in LD with rs2273684 (count: 2) View in gBrowse (chr20:34821547..34941963 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016