SNP Report

Basic Info

Name	rs2273502 dbSNP Ensembl
Location	chr20:63356470 - 63356470(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.116414
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000626188, ENST00000628606, ENST00000636726, ENST00000637443); intron_variant(ENST00000370263, ENST00000463705, ENST00000467563, ENST00000498043, ENST00000615287, ENST00000627000, ENST00000628665); NMD_transcript_variant(ENST00000498043, ENST00000627000); non_coding_transcript_exon_variant(ENST00000636481); non_coding_transcript_variant(ENST00000463705, ENST00000467563, ENST00000628665, ENST00000636481); upstream_gene_variant(ENST00000370257, ENST00000627869, ENST00000636652, ENST00000637243, ENST00000637628)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Shi, J., 2007	C/T		TDT P-value = 0.28 of Allelic Association With Bipolar Disor...... TDT P-value = 0.28 of Allelic Association With Bipolar Disorder in the Combined Sample More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CHRNA4	cholinergic receptor, nicotinic, alpha 4 (neuronal)	20q13.33	1(1/0/0)

SNPs in LD with rs2273502 (count: 0) View in gBrowse (chr20:63356470..63356470 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)