BDgene

SNP Report

Basic Info
Name rs2268115 dbSNP Ensembl
Location chr12:13716791 - 13716791(1)
Variant Alleles G/T
Ancestral Allele C
Minor Allele G
Minor Allele Frequence 0.483826
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000609686)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/C C Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0352, Gene-wide P-value = 0.6743 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B 12p13.1 8(4/4/0)

SNPs in LD with rs2268115 (count: 5) View in gBrowse (chr12:13705888..13716791 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016