SNP Report

Basic Info

Name	rs2249917 dbSNP Ensembl
Location	chr4:186613221 - 186613221(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.417931
Functional Annotation	synonymous_variant; upstream_gene_variant.
Consequence to Transcript	synonymous_variant(ENST00000441802, ENST00000614102); upstream_gene_variant(ENST00000508035)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Abou Jamra, R, 2008 (a)	C/T		allelic P-value = 0.07175 allelic P-value = 0.07175	showed no association with bipolar affective disorder showed no association with bipolar affective disorder	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CD36	CD36 molecule (thrombospondin receptor)	7q11.2	3(2/1/0)
FAT1	FAT atypical cadherin 1	4q35.2	Mapped by Literature SNP

SNPs in LD with rs2249917 (count: 1) View in gBrowse (chr4:186613221..186617176 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs1280099		synonymous_variant	0.915[CEU]; 0.885[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)