SNP Report

Basic Info

Name	rs2244924 dbSNP Ensembl
Location	chr6:107940111 - 107940111(1)
Variant Alleles	A/C
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.268371
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000369002, ENST00000429168, ENST00000446496, ENST00000484803); NMD_transcript_variant(ENST00000446496); non_coding_transcript_variant(ENST00000484803)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Fan, J., 2010		A	P-value = 0.0029 in STEP1 sample; P-value = 0.0029 in STEP1 sample;	showed evidence of association in the STEP1 sample showed evidence of association in the STEP1 sample	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SEC63	SEC63 homolog (S. cerevisiae)	6q21	1(1/0/0)

SNPs in LD with rs2244924 (count: 0) View in gBrowse (chr6:107940111..107940111 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)