SNP Report

Basic Info

Name	rs2239670 dbSNP Ensembl
Location	chr5:71719676 - 71719676(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.167732
Functional Annotation	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000296777); non_coding_transcript_exon_variant(ENST00000513096); non_coding_transcript_variant(ENST00000513096)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Jung, S. K., 2004	G/A		Chi-square test genotypic P-value = 0.530, allelic P-value =...... Chi-square test genotypic P-value = 0.530, allelic P-value = 0.459, OR (95% CI)=1.223 (0.718-2.081) for BP when compared with controls. More...	The AvaII polymorphism of the CART gene did not show associa...... The AvaII polymorphism of the CART gene did not show association with bipolar disorder and schizophrenia. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CARTPT	CART prepropeptide	5q13.2	1(0/1/0)

SNPs in LD with rs2239670 (count: 0) View in gBrowse (chr5:71719676..71719676 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Jung, S. K., 2004	Chi-square test genotypic P-value = 0.350, allelic P-value = 0.364, OR (95% CI)=1.139 (0.859-2.512) for schizophrenia when compared with controls.	The AvaII polymorphism of the CART gene did not show association with schizophrenia.	Negative

Overlap with MDD from cross-disorder studies (count: 0)