BDgene

SNP Report

Basic Info
Name rs2208870 dbSNP Ensembl
Location chr6:5992257 - 5992257(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.332468
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Fatjo-Vilas, M., 2016 A/G G P(unadj)-value=0.028 P(unadj)-value=0.028 SNP1(G allele), SNP4 (C allele) and SNP5 (C allele) were sig...... SNP1(G allele), SNP4 (C allele) and SNP5 (C allele) were significantly more frequent among patients compared to controls. After multiple correction adjustment only the association of SNP5 remained significant. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NRN1 neuritin 1 6p25.1 Mapped by Literature SNP

SNPs in LD with rs2208870 (count: 12) View in gBrowse (chr6:5992257..5997386 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 12)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016