BDgene

SNP Report

Basic Info
Name rs2168631 dbSNP Ensembl
Location chr5:175448999 - 175448999(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.270168
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000393752)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/G A Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0475, Gene-wide P-value = 0.1898 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DRD1 dopamine receptor D1 5q34-q35 11(6/5/0)

SNPs in LD with rs2168631 (count: 7) View in gBrowse (chr5:175437204..175468399 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)