BDgene

SNP Report

Basic Info
Name rs2156635 dbSNP Ensembl
Location chr11:120900959 - 120900959(1)
Variant Alleles C/G
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.41274
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000438375, ENST00000527524, ENST00000533291); non_coding_transcript_variant(ENST00000533291)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Pickard, B. S., 2006 C/G P-value = 0.081 between BPD cases and controls; P-value = 0...... P-value = 0.081 between BPD cases and controls; P-value = 0.041 between all cases and controls More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRIK4 glutamate receptor, ionotropic, kainate 4 11q23.3 2(1/1/0)

SNPs in LD with rs2156635 (count: 0) View in gBrowse (chr11:120900959..120900959 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Pickard, B. S., 2006 P-value = 0.081 between SCZ cases and controls; P-value = 0.041 between all cases and controls Positive

Overlap with MDD from cross-disorder studies (count: 0)