BDgene

SNP Report

Basic Info
Name rs2119226 dbSNP Ensembl
Location chr8:101940671 - 101940671(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.391374
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000311028, ENST00000395923, ENST00000517531, ENST00000517639, ENST00000517822, ENST00000518166, ENST00000518661, ENST00000518727, ENST00000518952, ENST00000520425, ENST00000520690, ENST00000521599, ENST00000521964, ENST00000522078, ENST00000522206, ENST00000523923, ENST00000524209); non_coding_transcript_variant(ENST00000517639, ENST00000518952)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 P(unadj)-value=0.001482, OR (unadj)=0.8095, P(adj)-value=0...... P(unadj)-value=0.001482, OR (unadj)=0.8095, P(adj)-value=0.001461, OR(adj)=0.8019 More... Listing suggestive significant genic SNPs for combined Toron...... Listing suggestive significant genic SNPs for combined Toronto and London GWAS for which there are 4 or more suggestive significant SNPs among the top 1000, and for which no other positive reports have been published to date. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NCALD neurocalcin delta 8q22.3 1(0/1/0)

SNPs in LD with rs2119226 (count: 39) View in gBrowse (chr8:101935157..101976423 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 39)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016