BDgene

SNP Report

Basic Info
Name rs2000342 dbSNP Ensembl
Location chr13:99027593 - 99027593(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.448083
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000384568); intron_variant(ENST00000427887, ENST00000479769); NMD_transcript_variant(ENST00000479769)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Detera-Wadleigh, S. D., 2007 TDT P-value = 0.04766 in initial families, FBAT-e P-value = ...... TDT P-value = 0.04766 in initial families, FBAT-e P-value = 0.1097 in NIMH1-2, FBAT-e P-value = 0.267 in NIMH3, FBAT-e P-value = 0.4405 in NIMH4 More... TDT analysis detected association with bipolar disorder TDT analysis detected association with bipolar disorder Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RNU6-83P RNA, U6 small nuclear 83, pseudogene 13q32.3 Mapped by Literature SNP
DOCK9 dedicator of cytokinesis 9 13q32.3 1(1/0/0)

SNPs in LD with rs2000342 (count: 0) View in gBrowse (chr13:99027593..99027593 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)