SNP Report

Basic Info

Name	rs1952603 dbSNP Ensembl
Location	chr14:33680119 - 33680119(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.14996
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000346562, ENST00000356141, ENST00000357798, ENST00000547068, ENST00000548645, ENST00000551008, ENST00000551492, ENST00000551634)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Pickard, B. S.,2009	A/G		Alelle association: P-value = 0.106 Alelle association: P-value = 0.106	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NPAS3	neuronal PAS domain protein 3	14q13.1	2(1/1/0)

SNPs in LD with rs1952603 (count: 1) View in gBrowse (chr14:33680119..33684036 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs1958556		downstream_gene_variant; intron_variant	0.954[CEU]; 0.948[TSI]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Pickard, B. S.,2009	Alelle association:P-value = 0.7234	No significant association was observed	Negative

Overlap with MDD from cross-disorder studies (count: 0)