SNP Report

Basic Info

Name	rs1917813 dbSNP Ensembl
Location	chr10:49649789 - 49649789(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.35643
Functional Annotation	intron_variant; NMD_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000337653, ENST00000339797, ENST00000351556, ENST00000395559, ENST00000395562, ENST00000466590); NMD_transcript_variant(ENST00000466590)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Shi, J., 2007	C/T		TDT P-value = 0.61 of Allelic Association With Bipolar Disor...... TDT P-value = 0.61 of Allelic Association With Bipolar Disorder in the Combined Sample More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CHAT	choline O-acetyltransferase	10q11.2	1(0/1/0)

SNPs in LD with rs1917813 (count: 7) View in gBrowse (chr10:49649789..49651583 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs10776586	intron_variant; NMD_transcript_variant	0.961[CEU]
rs7900310	intron_variant; NMD_transcript_variant	0.96[CEU]
rs1917811	intron_variant; NMD_transcript_variant	1.0[CEU]
rs6537545	intron_variant; NMD_transcript_variant	0.879[CEU]
rs6537544	intron_variant; NMD_transcript_variant	0.96[CEU]
rs7903496	intron_variant; NMD_transcript_variant	0.961[CEU]; 0.977[TSI]
rs10776585	intron_variant; NMD_transcript_variant	0.961[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)