BDgene

SNP Report

Basic Info
Name rs1917810 dbSNP Ensembl
Location chr10:49662025 - 49662025(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.46905
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000337653, ENST00000339797, ENST00000351556, ENST00000395559, ENST00000395562, ENST00000466590); NMD_transcript_variant(ENST00000466590)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2007 A/G TDT P-value = 0.82 of Allelic Association With Bipolar Disor...... TDT P-value = 0.82 of Allelic Association With Bipolar Disorder in the Combined Sample More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CHAT choline O-acetyltransferase 10q11.2 1(0/1/0)

SNPs in LD with rs1917810 (count: 12) View in gBrowse (chr10:49654358..49676902 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 12)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)