SNP Report

Basic Info

Name	rs1887856 dbSNP Ensembl
Location	chr13:98827093 - 98827093(1)
Variant Alleles	G/C
Ancestral Allele	G
Minor Allele	C
Minor Allele Frequence	0.23143
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000449796, ENST00000450257); intron_variant(ENST00000339416, ENST00000340449, ENST00000376460, ENST00000400228, ENST00000419908, ENST00000442173, ENST00000448493, ENST00000451563, ENST00000481051, ENST00000630992); NMD_transcript_variant(ENST00000339416, ENST00000630992); non_coding_transcript_variant(ENST00000481051); upstream_gene_variant(ENST00000439367)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Detera-Wadleigh, S. D., 2007			TDT P-value = 0.174 in initial families TDT P-value = 0.174 in initial families	no significant over-transmission of any alleles was detected no significant over-transmission of any alleles was detected	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DOCK9	dedicator of cytokinesis 9	13q32.3	1(1/0/0)
DOCK9-AS1	DOCK9 antisense RNA 1	13q32.3	Mapped by Literature SNP

SNPs in LD with rs1887856 (count: 0) View in gBrowse (chr13:98827093..98827093 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)