SNP Report

Basic Info
Name rs1887856 dbSNP Ensembl
Location chr13:98827093 - 98827093(1)
Variant Alleles G/C
Ancestral Allele G
Minor Allele C
Minor Allele Frequence 0.23143
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000449796, ENST00000450257); intron_variant(ENST00000339416, ENST00000340449, ENST00000376460, ENST00000400228, ENST00000419908, ENST00000442173, ENST00000448493, ENST00000451563, ENST00000481051, ENST00000630992); NMD_transcript_variant(ENST00000339416, ENST00000630992); non_coding_transcript_variant(ENST00000481051); upstream_gene_variant(ENST00000439367)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Detera-Wadleigh, S. D., 2007 TDT P-value = 0.174 in initial families TDT P-value = 0.174 in initial families no significant over-transmission of any alleles was detected no significant over-transmission of any alleles was detected Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DOCK9 dedicator of cytokinesis 9 13q32.3 1(1/0/0)
DOCK9-AS1 DOCK9 antisense RNA 1 13q32.3 Mapped by Literature SNP

SNPs in LD with rs1887856 (count: 0) View in gBrowse (chr13:98827093..98827093 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)