BDgene

SNP Report

Basic Info
Name rs1886554 dbSNP Ensembl
Location chr13:99009826 - 99009826(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.237819
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000339416, ENST00000427887, ENST00000448493, ENST00000479769); NMD_transcript_variant(ENST00000339416, ENST00000479769)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Detera-Wadleigh, S. D., 2007 FBAT-e P-value = 0.0156 in NIMH1-2, FBAT-e P-value = 0.0872 ...... FBAT-e P-value = 0.0156 in NIMH1-2, FBAT-e P-value = 0.0872 in NIMH3, FBAT-e P-value = 0.37 in NIMH4 More... detected evidence of association at the P<0.05 level in the ...... detected evidence of association at the P<0.05 level in the NIMH1-2 More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DOCK9 dedicator of cytokinesis 9 13q32.3 1(1/0/0)

SNPs in LD with rs1886554 (count: 0) View in gBrowse (chr13:99009826..99009826 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)