SNP Report

Basic Info

Name	rs1873687 dbSNP Ensembl
Location	chr10:62377116 - 62377116(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.434704
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000421210); intron_variant(ENST00000395254, ENST00000395255, ENST00000410046, ENST00000466727); non_coding_transcript_variant(ENST00000466727)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Anitha, A.,2009	T/C		Fisher's Exact test: Allelic association P-value = 0.489 ; G...... Fisher's Exact test: Allelic association P-value = 0.489 ; Genotypic association P-value = 0.419 More...	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ZNF365	zinc finger protein 365	10q21.2	Mapped by Literature SNP

SNPs in LD with rs1873687 (count: 35) View in gBrowse (chr10:62325942..62415679 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 35)

rs_ID	Functional Annotation	r²[population]
rs3781215	intron_variant; non_coding_transcript_variant	0.804[CHB]; 0.932[JPT]
rs12356848	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs3852422		0.935[CHB]; 1.0[JPT]
rs10995151	intron_variant	0.933[CHB]; 0.806[JPT]
rs7476555	downstream_gene_variant	0.933[CHB]; 1.0[JPT]
rs7895647		0.936[CHB]; 1.0[JPT]
rs10761628	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.922[CHD]; 1.0[JPT]
rs4746442	downstream_gene_variant	0.936[CHB]; 0.918[CHD]; 1.0[JPT]
rs10821993	downstream_gene_variant; intron_variant	0.933[CHB]; 0.937[JPT]
rs4746569	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.922[CHD]; 1.0[JPT]
rs10995147	downstream_gene_variant; intron_variant	0.929[CHB]; 1.0[JPT]
rs10821988	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs10740073		1.0[CHB]; 0.928[JPT]
rs10995129	upstream_gene_variant	0.929[CHB]; 0.923[JPT]
rs3999187		0.936[CHB]; 1.0[JPT]
rs10995124		1.0[CHB]; 1.0[JPT]
rs10761625		0.936[CHB]; 1.0[JPT]
rs10995122		0.936[CHB]; 1.0[JPT]
rs10509167		0.936[CHB]; 1.0[JPT]
rs3864812		0.935[CHB]; 1.0[JPT]
rs7918818		0.936[CHB]; 1.0[JPT]
rs10995130		0.93[CHB]; 1.0[JPT]
rs7895338		0.936[CHB]; 1.0[JPT]
rs1907707		0.936[CHB]; 0.918[CHD]; 1.0[JPT]
rs4104477	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.922[CHD]; 1.0[JPT]
rs10995135	downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.936[CHB]; 1.0[JPT]
rs10821991	downstream_gene_variant; intron_variant	0.932[CHB]; 0.917[JPT]
rs10761622		0.936[CHB]; 0.918[CHD]; 1.0[JPT]
rs3824731	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.88[CHD]; 1.0[JPT]
rs10821987	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs10995139	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs10733773	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs11593322		0.936[CHB]; 0.918[CHD]; 1.0[JPT]
rs10995123		0.933[CHB]; 1.0[JPT]
rs7919462		0.936[CHB]; 0.918[CHD]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)