SNP Report

Basic Info

Name	rs1801117 dbSNP Ensembl
Location	chr22:36933957 - 36933957(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.187899
Functional Annotation	downstream_gene_variant; synonymous_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000421539); synonymous_variant(ENST00000262825, ENST00000403662, ENST00000406230)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Chen, P.,2011	C/T		Single site association analysis: for BPAD, allele, OR=1.013...... Single site association analysis: for BPAD, allele, OR=1.013, P-value = 0.921 More...	No significant association was observed in BPAD. No significant association was observed in BPAD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CSF2RB	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	22q12.3	2(1/1/0)

SNPs in LD with rs1801117 (count: 0) View in gBrowse (chr22:36933957..36933957 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Chen, P.,2011	Single site association analysis:for SZ, allele, OR=0.978, P-value = 0.862	No significant association was observed in SZ.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Chen, P.,2011	Single site association analysis:for MDD, allele, OR=0.994, P-value = 0.964	No significant association was observed in MDD.	Negative