BDgene

SNP Report

Basic Info
Name rs1800067 dbSNP Ensembl
Location chr16:13935176 - 13935176(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.0285543
Functional Annotation downstream_gene_variant; intron_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Polyphen Annotation: probably damaging(ENST00000311895, LRG_463t1)
SIFT Annotation: deleterious(ENST00000311895, LRG_463t1)
Consequence to Transcript downstream_gene_variant(ENST00000574194, ENST00000574781, ENST00000575156); intron_variant(ENST00000570663); missense_variant(ENST00000311895, LRG_463t1); non_coding_transcript_exon_variant(ENST00000389138, ENST00000573018, ENST00000575137); non_coding_transcript_variant(ENST00000389138, ENST00000570663, ENST00000573018, ENST00000575137); upstream_gene_variant(ENST00000462862)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Georgi, B., 2014 G/A GERP=5.77 GERP=5.77 Putative damaging exonic variants found in the five linkage ...... Putative damaging exonic variants found in the five linkage regions. More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ERCC4 excision repair cross-complementation group 4 16p13.3 1(0/0/1)

SNPs in LD with rs1800067 (count: 1) View in gBrowse (chr16:13921720..13935176 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)