BDgene

SNP Report

Basic Info
Name rs17670187 dbSNP Ensembl
Location chr5:76944213 - 76944213(1)
Variant Alleles G/C
Ancestral Allele G
Minor Allele C
Minor Allele Frequence 0.0491214
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000516875)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ceulemans, S.,2011 C/G Single SNP analyses: Permuted P-value = 0.3199, Odds Ratio=1...... Single SNP analyses: Permuted P-value = 0.3199, Odds Ratio=1.273 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RNU6ATAC36P RNA, U6atac small nuclear 36, pseudogene 5q13.3 Mapped by Literature SNP
CRHBP corticotropin releasing hormone binding protein 5q13.3 1(0/1/0)

SNPs in LD with rs17670187 (count: 2) View in gBrowse (chr5:76936222..76944213 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016