BDgene

SNP Report

Basic Info
Name rs17646069 dbSNP Ensembl
Location chr13:42229127 - 42229127(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.0623003
Functional Annotation 3_prime_UTR_variant; missense_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant.
Polyphen Annotation: benign(ENST00000536612, ENST00000628433, ENST00000337343)
SIFT Annotation: tolerated(ENST00000337343); deleterious(ENST00000536612, ENST00000628433)
Consequence to Transcript 3_prime_UTR_variant(ENST00000626247, ENST00000627777); missense_variant(ENST00000536612, ENST00000628433, ENST00000337343); NMD_transcript_variant(ENST00000626247, ENST00000627777); non_coding_transcript_exon_variant(ENST00000498255); non_coding_transcript_variant(ENST00000498255); synonymous_variant(ENST00000261491, ENST00000379274)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Takata, A.,2011(a) T/C Fisher's exact test: allele P-value = 0.4508, genotype P-val...... Fisher's exact test: allele P-value = 0.4508, genotype P-value = 0.263 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DGKH diacylglycerol kinase, eta 13q13.3 6(3/3/0)

SNPs in LD with rs17646069 (count: 0) View in gBrowse (chr13:42229127..42229127 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)