BDgene

SNP Report

Basic Info
Name rs17498325 dbSNP Ensembl
Location chr16:64907984 - 64907984(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.107428
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 G/A NIMH/Pritzker: OR (95% CI)=1.42(1.09-1.87), P-value = 0.01; ...... NIMH/Pritzker: OR (95% CI)=1.42(1.09-1.87), P-value = 0.01; GSK(complete sample): OR (95% CI)=1.46(1.2-1.79), P-value = 0.00021; 2-study meta-analysis: OR (95% CI)=1.45(1.23-1.71), P-value = 0.0000091; Heterogeneity: I2%=0, P-value = 0.88 More... Trend

SNP related genes (count: 0)

SNPs in LD with rs17498325 (count: 1) View in gBrowse (chr16:64907984..65022047 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016