BDgene

SNP Report

Basic Info
Name rs17484839 dbSNP Ensembl
Location chr4:148389522 - 148389522(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.0591054
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000342437, ENST00000344721, ENST00000358102, ENST00000511528, ENST00000512865, ENST00000625323); NMD_transcript_variant(ENST00000342437)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ceulemans, S.,2011 C/T Single SNP analyses: Permuted P-value = 0.9056, Odds Ratio=1...... Single SNP analyses: Permuted P-value = 0.9056, Odds Ratio=1.028 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NR3C2 nuclear receptor subfamily 3, group C, member 2 4q31 1(1/0/0)

SNPs in LD with rs17484839 (count: 15) View in gBrowse (chr4:148362978..148423085 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016