SNP Report

Basic Info
Name rs17418283 dbSNP Ensembl
Location chr5:94818883 - 94818883(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.144768
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000312216, ENST00000429576, ENST00000505078, ENST00000508509, ENST00000512425, ENST00000515393)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 C/T NIMH/Pritzker: OR (95% CI)=1.09(0.93-1.28), P-value = 0.31; ...... NIMH/Pritzker: OR (95% CI)=1.09(0.93-1.28), P-value = 0.31; GSK(reduced sample): OR (95% CI)=1.19(1.01-1.41), P-value = 0.038; WTCCC: OR (95% CI)=1.25(1.15-1.36), P-value = 0.000000097; 3-study meta-analysis: OR (95% CI)=1.21(1.13-1.3), P-value = 0.00000013; Heterogeneity: I2%=15, P-value = 0.31 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MCTP1 multiple C2 domains, transmembrane 1 5q15 Mapped by Literature SNP

SNPs in LD with rs17418283 (count: 0) View in gBrowse (chr5:94818883..94818883 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)