SNP Report

Basic Info
Name rs17350383 dbSNP Ensembl
Location chr7:18890590 - 18890590(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.134784
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000447057); intron_variant(ENST00000401921, ENST00000406451, ENST00000432645, ENST00000441542, ENST00000483142, ENST00000490851, ENST00000496026); non_coding_transcript_variant(ENST00000483142, ENST00000490851, ENST00000496026)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Baum, A. E., 2008 (a) T P-value = 0.218 when genotyped individually in the test samp...... P-value = 0.218 when genotyped individually in the test sample (NIMH) More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HDAC9 histone deacetylase 9 7p21.1 1(1/0/0)

SNPs in LD with rs17350383 (count: 8) View in gBrowse (chr7:18884666..18893487 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 8)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)