BDgene

SNP Report

Basic Info
Name rs17172438 dbSNP Ensembl
Location chr7:55083844 - 55083844(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.175719
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000275493, ENST00000342916, ENST00000344576, ENST00000420316, ENST00000454757, ENST00000455089, ENST00000463948, LRG_304t1); non_coding_transcript_variant(ENST00000463948)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sklar, P., 2008 C/T CMH (Cochran-Mantel-Haenszel) P-value = 3.26E-05, allelic P-...... CMH (Cochran-Mantel-Haenszel) P-value = 3.26E-05, allelic P-value = 1.26E-05, OR=1.32, pSNP test P-value = 1.58E-05, pHAP test P-value = 9.28E-07, r2=0.69 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
EGFR epidermal growth factor receptor 7p12 1(0/0/1)

SNPs in LD with rs17172438 (count: 15) View in gBrowse (chr7:55073093..55091656 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016