SNP Report

Basic Info

Name	rs16976358 dbSNP Ensembl
Location	chr18:42611606 - 42611606(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.0477236
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000589068); non_coding_transcript_variant(ENST00000589068)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Emamalizadeh, B., 2016	G/A		Genotype test: P-value=0.001; Allele test: P-value=0.007, OR...... Genotype test: P-value=0.001; Allele test: P-value=0.007, OR=1.43, 95%CI=1.10-1.87; additive model: P-value=0.007,Â OR=1.43, 95%CI=1.10-1.87; dominant model: P-value=0.057,Â OR=1.34, 95%CI=0.99-1.80; ressecive model: P-value=0.0004,Â OR=6.21, 95%CI=1.82-21.24 More...	The genotype distribution and allele frequencies were signif...... The genotype distribution and allele frequencies were significantly different in rs16976358 between normal controls and patients with autism, SCZ, and BPD. The association of rs16976358 with autism,SCZ,and BPD was also significant under additive and recessive models. More...	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
RIT2	Ras-like without CAAX 2	18q12.3	Mapped by Literature SNP
LINC00907	long intergenic non-protein coding RNA 907	18q12.3	Mapped by Literature SNP

SNPs in LD with rs16976358 (count: 0) View in gBrowse (chr18:42611606..42611606 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)