SNP Report

Basic Info

Name	rs16942644 dbSNP Ensembl
Location	chr15:89069505 - 89069505(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.276558
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000565938); non_coding_transcript_variant(ENST00000565938)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Hamshere, M. L.,2009			lambda-corrected Cochran-Armitage trend test: P-value = 1.38...... lambda-corrected Cochran-Armitage trend test: P-value = 1.38E-06 More...	one of independently associated SNPs that exceed a significa...... one of independently associated SNPs that exceed a significance threshold of P-value E-05(all of which have good quality clusterplots) More...	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ABHD2	abhydrolase domain containing 2	15q26.1	2(0/1/1)

SNPs in LD with rs16942644 (count: 8) View in gBrowse (chr15:89060497..89075419 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs12437650	non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]
rs11855344	intron_variant; non_coding_transcript_variant	0.899[CEU]
rs9788771	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs893916	intron_variant; non_coding_transcript_variant	0.899[CEU]
rs8028760	intron_variant; non_coding_transcript_variant	0.865[CEU]
rs16942665	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs4932465	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs11073831	intron_variant; non_coding_transcript_variant	0.815[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)