BDgene

SNP Report

Basic Info
Name rs16840892 dbSNP Ensembl
Location chr4:7714334 - 7714334(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.109425
Functional Annotation missense_variant.
Polyphen Annotation: benign(ENST00000329016, ENST00000507866)
SIFT Annotation: tolerated(ENST00000329016, ENST00000507866)
Consequence to Transcript missense_variant(ENST00000329016, ENST00000507866)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Takata, A.,2011(a) T/C Fisher's exact test: allele P-value = 0.8695, genotype P-val...... Fisher's exact test: allele P-value = 0.8695, genotype P-value = 0.748 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SORCS2 sortilin-related VPS10 domain containing receptor 2 4p16.1 5(3/2/0)

SNPs in LD with rs16840892 (count: 0) View in gBrowse (chr4:7714334..7714334 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)