SNP Report

Basic Info

Name	rs1668875 dbSNP Ensembl
Location	chr8:127328858 - 127328858(1)
Variant Alleles	G/C
Ancestral Allele	G
Minor Allele	C
Minor Allele Frequence	0.484425
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000501396, ENST00000502082, ENST00000523825); non_coding_transcript_variant(ENST00000501396, ENST00000502082, ENST00000523825)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Zandi, P. P., 2008 (b)	C/G	G	FBAT allelic P-value = 6.75E-03 ; Geno-PDT genotypic P-valu...... FBAT allelic P-value = 6.75E-03 ; Geno-PDT genotypic P-value = 5.00E-04 More...	None of the SNPs were associated with BP in the single-locus...... None of the SNPs were associated with BP in the single-locus tests at a level that exceeded our threshold for study-wide significance (P<3.00E-05). More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CASC8	cancer susceptibility candidate 8 (non-protein coding)	8q24.21	Mapped by Literature SNP

SNPs in LD with rs1668875 (count: 3) View in gBrowse (chr8:127309166..127329482 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs587948	intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.953[TSI]
rs623401	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs453875	intron_variant; non_coding_transcript_variant	0.961[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)