SNP Report

Basic Info
Name rs1645660 dbSNP Ensembl
Location chr5:36644198 - 36644198(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.327276
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000265113, ENST00000381918, ENST00000509272, ENST00000514563, ENST00000612708, ENST00000613445, ENST00000618632); non_coding_transcript_variant(ENST00000509272, ENST00000514563, ENST00000618632)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/G A Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0292, Gene-wide P-value = 0.2927 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 5p13 Mapped by Literature SNP

SNPs in LD with rs1645660 (count: 0) View in gBrowse (chr5:36644198..36644198 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)