BDgene

SNP Report

Basic Info
Name rs1541187 dbSNP Ensembl
Location chr1:147579693 - 147579693(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.158546
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000234739)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Li, J.,2011(b) C/T Third-Stage Sample: for BPD, allele association P-value = 0....... Third-Stage Sample: for BPD, allele association P-value = 0.09, OR(95%CI)=1.19(0.97-1.49) More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
BCL9 B-cell CLL/lymphoma 9 1q21 1(1/0/0)

SNPs in LD with rs1541187 (count: 2) View in gBrowse (chr1:147558681..147579693 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Li, J.,2011(b) Third-Stage Sample:for SZ, allele association P-value = 0.15, OR(95%CI)=1.16(0.95-1.43);Combined Third-Stage Sample, allele association P-value = 0.24, OR(98%CI)=1.06(0.97-1.17) No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Li, J.,2011(b) Third-Stage Sample:for MDD, allele association P-value = 0.04, OR(95%CI)=1.23(1.01-1.52) Significant association was observed in MDD. Positive