BDgene

SNP Report

Basic Info
Name rs1536057 dbSNP Ensembl
Location chr6:108564420 - 108564420(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.294728
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000343882, ENST00000406360)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Magno, L. A.,2011 G/A Chi-square tests: genotype: X2=11.11, P-value = 0...... Chi-square tests: genotype: X2=11.11, P-value = 0.0038; allele: X2=7.42, P-value = 0.0064 More... Significant association was found . Significant association was found . Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FOXO3 forkhead box O3 6q21 1(1/0/0)

SNPs in LD with rs1536057 (count: 0) View in gBrowse (chr6:108564420..108564420 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016