SNP Report

Basic Info
Name rs1522928 dbSNP Ensembl
Location chr2:73298409 - 73298409(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.332268
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000436467, ENST00000517179, ENST00000545030)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Gallitano, A. L.,2012 Association analysis: FBAT, P-value > 0.05 Association analysis: FBAT, P-value > 0.05 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RNU6-111P RNA, U6 small nuclear 111, pseudogene 2p13.1 Mapped by Literature SNP
EGR4 early growth response 4 2p13 1(0/1/0)

SNPs in LD with rs1522928 (count: 2) View in gBrowse (chr2:73284937..73299781 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)