SNP Report

Basic Info

Name	rs1522928 dbSNP Ensembl
Location	chr2:73298409 - 73298409(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.332268
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000436467, ENST00000517179, ENST00000545030)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Gallitano, A. L.,2012			Association analysis: FBAT, P-value > 0.05 Association analysis: FBAT, P-value > 0.05	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
RNU6-111P	RNA, U6 small nuclear 111, pseudogene	2p13.1	Mapped by Literature SNP
EGR4	early growth response 4	2p13	1(0/1/0)

SNPs in LD with rs1522928 (count: 2) View in gBrowse (chr2:73284937..73299781 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs6546816		downstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs7566449		upstream_gene_variant	1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)