BDgene

SNP Report

Basic Info
Name rs1485172 dbSNP Ensembl
Location chr3:7579471 - 7579471(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.496406
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000445087); intron_variant(ENST00000357716, ENST00000389335, ENST00000389336, ENST00000402647, ENST00000440923, ENST00000458641, ENST00000463676, ENST00000467425, ENST00000486284); NMD_transcript_variant(ENST00000389335, ENST00000440923, ENST00000467425); non_coding_transcript_variant(ENST00000458641, ENST00000463676)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kandaswamy R., 2014 C/T MAF=0.43 MAF=0.43 No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRM7 glutamate receptor, metabotropic 7 3p26-p25 3(2/1/0)

SNPs in LD with rs1485172 (count: 6) View in gBrowse (chr3:7570291..7601893 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016