SNP Report

Basic Info

Name	rs145244580 dbSNP Ensembl
Location	chr7:93195875 - 93195875(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.00119808
Functional Annotation	missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant. Polyphen Annotation: probably damaging(ENST00000341723, ENST00000394468, ENST00000453812) SIFT Annotation: deleterious(ENST00000341723, ENST00000394468, ENST00000453812)
Consequence to Transcript	missense_variant(ENST00000341723, ENST00000394468, ENST00000453812); non_coding_transcript_exon_variant(ENST00000492616); non_coding_transcript_variant(ENST00000492616); synonymous_variant(ENST00000440868)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Georgi, B., 2014	C/T		GERP=4.89 GERP=4.89	Putative damaging exonic variants found in the five linkage ...... Putative damaging exonic variants found in the five linkage regions. More...	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
HEPACAM2	HEPACAM family member 2	7q21.3	1(0/0/1)

SNPs in LD with rs145244580 (count: 0) View in gBrowse (chr7:93195875..93195875 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)