BDgene

SNP Report

Basic Info
Name rs145244580 dbSNP Ensembl
Location chr7:93195875 - 93195875(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.00119808
Functional Annotation missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant.
Polyphen Annotation: probably damaging(ENST00000341723, ENST00000394468, ENST00000453812)
SIFT Annotation: deleterious(ENST00000341723, ENST00000394468, ENST00000453812)
Consequence to Transcript missense_variant(ENST00000341723, ENST00000394468, ENST00000453812); non_coding_transcript_exon_variant(ENST00000492616); non_coding_transcript_variant(ENST00000492616); synonymous_variant(ENST00000440868)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Georgi, B., 2014 C/T GERP=4.89 GERP=4.89 Putative damaging exonic variants found in the five linkage ...... Putative damaging exonic variants found in the five linkage regions. More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HEPACAM2 HEPACAM family member 2 7q21.3 1(0/0/1)

SNPs in LD with rs145244580 (count: 0) View in gBrowse (chr7:93195875..93195875 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)