BDgene

SNP Report

Basic Info
Name rs1435013 dbSNP Ensembl
Location chr2:162669601 - 162669601(1)
Variant Alleles A/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.232029
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000328032, ENST00000332142)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kuo, P. H., 2014 P-value=0.02044, OR=0.7, 95%CI=0.6-0.95 for the second stag...... P-value=0.02044, OR=0.7, 95%CI=0.6-0.95 for the second stage More... The marker is identified to be associated with bipolar disor...... The marker is identified to be associated with bipolar disorder in the fine-mapping stage with P-value less than 0.05. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
KCNH7 potassium channel, voltage gated eag related subfamily H, member 7 2q24.3 3(2/0/1)

SNPs in LD with rs1435013 (count: 11) View in gBrowse (chr2:162663392..162696907 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 11)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016