BDgene

SNP Report

Basic Info
Name rs140673 dbSNP Ensembl
Location chr15:27327182 - 27327182(1)
Variant Alleles A/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.132788
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000333743, ENST00000554696, ENST00000555083, ENST00000615808); upstream_gene_variant(ENST00000557596)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 C/A P-value=3.83E-05 P-value=3.83E-05 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GABRG3 gamma-aminobutyric acid (GABA) A receptor, gamma 3 15q12 1(0/1/0)

SNPs in LD with rs140673 (count: 10) View in gBrowse (chr15:27322238..27354479 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)