SNP Report

Basic Info

Name	rs1404682 dbSNP Ensembl
Location	chr7:64237817 - 64237817(1)
Variant Alleles	C/A
Minor Allele	C
Minor Allele Frequence	0.0571086
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000421025)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Chen, X., 2015	A/C		P-value=5E-22,Â OR=0.36, 95%CI=0.29-0.45 P-value=5E-22,Â OR=0.36, 95%CI=0.29-0.45	Chromosome 7 associated SNPs and flanking genes for bipolar ...... Chromosome 7 associated SNPs and flanking genes for bipolar disorder (BPD) from Affymetrix Genome-wide Human SNP Array 6.0 in the population of Shandong province of China. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ZNF679	zinc finger protein 679	7q11.21	Mapped by Literature SNP

SNPs in LD with rs1404682 (count: 72) View in gBrowse (chr7:64211190..64427605 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 72)

rs_ID	Functional Annotation	r²[population]
rs7811803	upstream_gene_variant	0.846[CHB]; 0.888[JPT]
rs687484		1.0[CHB]; 0.888[JPT]
rs592283		1.0[CHB]; 0.888[JPT]
rs584120		1.0[CHB]; 0.888[JPT]
rs639274	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CHB]; 0.893[CHD]; 0.877[JPT]
rs687707		1.0[CHB]; 0.893[CHD]; 0.888[JPT]
rs614261		1.0[CHB]; 0.893[CHD]; 0.888[JPT]
rs636404	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CHB]; 0.887[JPT]
rs616074		0.846[CHB]; 0.893[CHD]; 1.0[JPT]
rs10267331	intron_variant	1.0[JPT]
rs651934		0.896[JPT]
rs4562194		1.0[CHB]; 0.888[JPT]
rs683689		0.81[JPT]
rs641215	intron_variant	1.0[CHB]; 0.888[JPT]
rs656604		1.0[CHB]; 0.888[JPT]
rs1852105	intron_variant	1.0[JPT]
rs662978	downstream_gene_variant	1.0[CHB]; 0.893[CHD]; 0.888[JPT]
rs641310	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.888[JPT]
rs2164110	intron_variant	1.0[JPT]
rs588479		1.0[CHB]; 0.888[JPT]
rs683510		0.811[JPT]
rs688262	downstream_gene_variant; intron_variant	1.0[CHB]
rs661173	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.888[JPT]
rs599238	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.888[JPT]
rs664631	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CHB]; 0.888[JPT]
rs11763256	intron_variant	0.802[CHD]; 1.0[JPT]
rs6949430	intron_variant	0.802[CHD]; 1.0[JPT]
rs618757	downstream_gene_variant	1.0[CHB]; 0.877[JPT]
rs620631	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.877[JPT]
rs2692110	3_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant	1.0[CHB]; 0.845[CHD]; 0.888[JPT]
rs776314		0.846[CHB]; 1.0[JPT]
rs607988		1.0[CHB]
rs615957	intron_variant	1.0[CHB]; 0.888[JPT]
rs606094		1.0[CHB]; 0.888[JPT]
rs659078		1.0[CHB]; 0.888[JPT]
rs2091267	downstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs1608778	intron_variant	0.811[JPT]
rs682158	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.862[JPT]
rs587711	3_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant	1.0[CHB]; 0.888[JPT]
rs667644		0.81[JPT]
rs583281	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.888[JPT]
rs626805		1.0[CHB]; 0.893[CHD]; 0.888[JPT]
rs611097		1.0[CHB]; 0.893[CHD]; 0.888[JPT]
rs686236	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.877[JPT]
rs632922		1.0[CHB]; 0.888[JPT]
rs653746		0.81[JPT]
rs17767341	intron_variant	0.811[JPT]
rs636413	downstream_gene_variant	1.0[CHB]
rs608731		1.0[CHB]; 0.888[JPT]
rs2082661	intron_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs656050		1.0[CHB]
rs3919874		1.0[CHB]; 0.888[JPT]
rs10224003	intron_variant	1.0[CHB]; 0.893[CHD]; 1.0[JPT]
rs10269829	intron_variant	0.838[CHD]; 1.0[JPT]
rs657683		1.0[CHB]; 0.888[JPT]
rs685617		1.0[CHB]
rs670092		0.846[CHB]; 1.0[JPT]
rs776294	intron_variant	1.0[CHB]; 0.888[JPT]
rs628388	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.888[JPT]
rs617438		0.846[CHB]; 0.893[CHD]; 1.0[JPT]
rs638684		1.0[CHB]; 0.888[JPT]
rs1987396	intron_variant	0.889[CHD]; 1.0[JPT]
rs1852111		1.0[CHB]; 0.888[JPT]
rs590890	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CHB]; 0.876[JPT]
rs676535	intron_variant	1.0[CHB]; 0.888[JPT]
rs1960321	downstream_gene_variant	0.811[JPT]
rs581612	intron_variant	1.0[CHB]; 0.888[JPT]
rs682587	3_prime_UTR_variant; downstream_gene_variant; upstream_gene_variant	1.0[CHB]; 0.802[CHD]; 0.888[JPT]
rs10266483		0.811[JPT]
rs620958		1.0[CHB]; 0.888[JPT]
rs663675		1.0[CHB]; 0.888[JPT]
rs659055	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.888[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)