BDgene

SNP Report

Basic Info
Name rs1396860 dbSNP Ensembl
Location chr11:6262222 - 6262222(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.138978
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000334619, ENST00000525014, ENST00000525462, ENST00000531712, ENST00000532715)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Gratacos, M.,2009 Single SNP association: In control and bipolar disorder samp...... Single SNP association: In control and bipolar disorder samples: Log-additive Model, P-value = 0.0079(corrected by genomic control, Reus), P-value = 0.0179(passed multiple testing correction, Madrid); OR(95% CI): Reus: 0.63 (0.46-0.86), Madrid: 0.68 (0.49-0.94) More... Nominal statistical significance was observed as P-value < 0...... Nominal statistical significance was observed as P-value < 0.05 using both control sets under the same genotypic mode. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CCKBR cholecystokinin B receptor 11p15.4 1(1/0/0)

SNPs in LD with rs1396860 (count: 13) View in gBrowse (chr11:6246764..6266698 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 13)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016