SNP Report

Basic Info

Name	rs135764 dbSNP Ensembl
Location	chr22:38314407 - 38314407(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.0900559
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000359867, ENST00000396832, ENST00000400206, ENST00000403904, ENST00000405675, ENST00000413574, ENST00000430335)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Matsunaga, S.,2012	A/G		Chi square test:MAF = 0.16,P-value = 0.77,OR = 0.98 Chi square test:MAF = 0.16,P-value = 0.77,OR = 0.98	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CSNK1E	casein kinase 1, epsilon	22q13.1	5(1/3/1)

SNPs in LD with rs135764 (count: 0) View in gBrowse (chr22:38314407..38314407 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Matsunaga, S.,2012	Chi square test:MAF = 0.15,P-value = 0.48,OR = 0.94	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Matsunaga, S.,2012	Chi square test:MAF = 0.17,P-value = 0.48,OR = 1.08	No significant association was observed.	Negative