BDgene

SNP Report

Basic Info
Name rs1341139 dbSNP Ensembl
Location chr13:78967053 - 78967053(1)
Variant Alleles C/A
Ancestral Allele A
Minor Allele C
Minor Allele Frequence 0.0407348
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sklar, P., 2008 C/A CMH (Cochran-Mantel-Haenszel) P-value = 7.23E-06, allelic P-...... CMH (Cochran-Mantel-Haenszel) P-value = 7.23E-06, allelic P-value = 3.16E-05, OR=0.56, pSNP test P-value = 2.15E-05, pHAP test P-value = 1.59E-04, r2=0.45 More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RNF219 ring finger protein 219 13q31.1 1(0/1/0)

SNPs in LD with rs1341139 (count: 0) View in gBrowse (chr13:78967053..78967053 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016