SNP Report

Basic Info

Name	rs13409348 dbSNP Ensembl
Location	chr2:79312862 - 79312862(1)
Variant Alleles	G/C
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.276158
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000466387, ENST00000467488, ENST00000496251, ENST00000497804); non_coding_transcript_variant(ENST00000467488, ENST00000496251, ENST00000497804)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Scott, L. J.,2009	G/C		NIMH/Pritzker: OR (95% CI)=1.12(0.95-1.32), P-value = 0.18; ...... NIMH/Pritzker: OR (95% CI)=1.12(0.95-1.32), P-value = 0.18; GSK(reduced sample): OR (95% CI)=1.2(1.00-1.43), P-value = 0.045; WTCCC: OR (95% CI)=1.22(1.12-1.33), P-value = 0.0000071; 3-study meta-analysis: OR (95% CI)=1.2(1.11-1.29), P-value = 0.0000027; Heterogeneity: I²%=0, P-value = 0.67 More...		Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CTNNA2	catenin (cadherin-associated protein), alpha 2	2p12-p11.1	Mapped by Literature SNP

SNPs in LD with rs13409348 (count: 3) View in gBrowse (chr2:79302346..79312862 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs6760650	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs13427217	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]
rs13418113	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)