SNP Report

Basic Info
Name rs13409348 dbSNP Ensembl
Location chr2:79312862 - 79312862(1)
Variant Alleles G/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.276158
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000466387, ENST00000467488, ENST00000496251, ENST00000497804); non_coding_transcript_variant(ENST00000467488, ENST00000496251, ENST00000497804)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 G/C NIMH/Pritzker: OR (95% CI)=1.12(0.95-1.32), P-value = 0.18; ...... NIMH/Pritzker: OR (95% CI)=1.12(0.95-1.32), P-value = 0.18; GSK(reduced sample): OR (95% CI)=1.2(1.00-1.43), P-value = 0.045; WTCCC: OR (95% CI)=1.22(1.12-1.33), P-value = 0.0000071; 3-study meta-analysis: OR (95% CI)=1.2(1.11-1.29), P-value = 0.0000027; Heterogeneity: I2%=0, P-value = 0.67 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CTNNA2 catenin (cadherin-associated protein), alpha 2 2p12-p11.1 Mapped by Literature SNP

SNPs in LD with rs13409348 (count: 3) View in gBrowse (chr2:79302346..79312862 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)