SNP Report

Basic Info

Name	rs1340 dbSNP Ensembl
Location	chr13:99088399 - 99088399(1)
Variant Alleles	T/A
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.335064
Functional Annotation	non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	non_coding_transcript_exon_variant(ENST00000562781); non_coding_transcript_variant(ENST00000562781); upstream_gene_variant(ENST00000427887, ENST00000479769)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Detera-Wadleigh, S. D., 2007			FBAT-e P-value = 0.0134 in NIMH1-2, FBAT-e P-value = 0.0396 ...... FBAT-e P-value = 0.0134 in NIMH1-2, FBAT-e P-value = 0.0396 in NIMH3, FBAT-e P-value = 0.4437 in NIMH4; FBAT-e P-value = 0.0683 in CHIP-CNG sample More...	detected evidence of association at the P<0.05 level in the ...... detected evidence of association at the P<0.05 level in the NIMH1-2; detected support for association in NIMH3 More...	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DOCK9-AS2	DOCK9 antisense RNA 2 (head to head)	13q32.3	Mapped by Literature SNP
DOCK9	dedicator of cytokinesis 9	13q32.3	1(1/0/0)

SNPs in LD with rs1340 (count: 0) View in gBrowse (chr13:99088399..99088399 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)