BDgene

SNP Report

Basic Info
Name rs13322211 dbSNP Ensembl
Location chr3:77176746 - 77176746(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.330471
Functional Annotation intron_variant; NMD_transcript_variant.
Consequence to Transcript intron_variant(ENST00000332191, ENST00000461745, ENST00000473767, ENST00000487694, ENST00000602589); NMD_transcript_variant(ENST00000473767)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kuo, P. H., 2014 P-value=0.01172, OR=1.6, 95%CI=1.1-2.3 for the second stage P-value=0.01172, OR=1.6, 95%CI=1.1-2.3 for the second stage The marker is identified to be associated with bipolar disor...... The marker is identified to be associated with bipolar disorder in the fine-mapping stage with P-value less than 0.05. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 3p12.3 1(0/1/0)

SNPs in LD with rs13322211 (count: 24) View in gBrowse (chr3:77134977..77237622 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 24)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016