BDgene

SNP Report

Basic Info
Name rs13211507 dbSNP Ensembl
Location chr6:28289600 - 28289600(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.0299521
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000259883)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Steinberg, S.,2012 T Association results in bipolar disorder follow-up samples(7,...... Association results in bipolar disorder follow-up samples(7,333 cases; 43,779 controls):OR(95% CI) = 1.05 (0.98, 1.13),P-value = 0.17 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PGBD1 piggyBac transposable element derived 1 6p22.1 Mapped by Literature SNP

SNPs in LD with rs13211507 (count: 0) View in gBrowse (chr6:28289600..28289600 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Steinberg, S.,2012 Association results in schizophrenia follow-up samples(10,671 cases; 23,900 controls):OR(95% CI) = 1.22 (1.14, 1.31),P-value = 5.2 x 10-9 The SNP showed a significant association with SZ. Positive

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016