BDgene

SNP Report

Basic Info
Name rs1316971 dbSNP Ensembl
Location chr15:78638168 - 78638168(1)
Variant Alleles A/G/T
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.442492
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000261751, ENST00000412074, ENST00000559849, ENST00000560511); NMD_transcript_variant(ENST00000559849); non_coding_transcript_variant(ENST00000560511)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2007 A/G TDT P-value = 0.43 of Allelic Association With Bipolar Disor...... TDT P-value = 0.43 of Allelic Association With Bipolar Disorder in the Combined Sample More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CHRNB4 cholinergic receptor, nicotinic, beta 4 (neuronal) 15q24 2(1/1/0)

SNPs in LD with rs1316971 (count: 3) View in gBrowse (chr15:78636536..78638168 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)