SNP Report

Basic Info

Name	rs13139393 dbSNP Ensembl
Location	chr4:188105370 - 188105370(1)
Variant Alleles	C/G
Ancestral Allele	C
Minor Allele	G
Minor Allele Frequence	0.131989
Functional Annotation	5_prime_UTR_variant; downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	5_prime_UTR_variant(ENST00000512729); downstream_gene_variant(ENST00000394461, ENST00000502707); non_coding_transcript_exon_variant(ENST00000511771); non_coding_transcript_variant(ENST00000511771); upstream_gene_variant(ENST00000326754, ENST00000464002, ENST00000503141, ENST00000503475)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Blair, I. P.,2005	G/C		X² goodness of fit tests: MAF=0.15, Genotype P-va...... X² goodness of fit tests: MAF=0.15, Genotype P-value = 0.8, Allele P-value = 0.8 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TRIML2	tripartite motif family-like 2	4q35.2	1(0/1/0)

SNPs in LD with rs13139393 (count: 0) View in gBrowse (chr4:188105370..188105370 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)